FastQCFastQC Report
Wed 8 May 2024
EGAF00007960176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443603
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12700.28629202237135454No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12560.2831360473215916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11010.24819489498493025No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10800.24346093241028577No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9630.21708599806583817No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9470.2134791694375376No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9160.20649093897020535No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8440.19026021014285296No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC8400.18935850298577783No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7530.1697463723193937No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA7430.16749210442670587No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG7080.15960216680229847No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6800.1532902167027725No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6800.1532902167027725No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6460.1456257058676339No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6280.1415680236607958No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6100.1375103414539577No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5910.1332272324578508No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5810.130972964565163No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5470.12330845373002437No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5400.12173046620514288No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5370.12105418583733653No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5340.1203779054695302No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5200.11722193041976722No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5160.11632022326269209No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5070.11429138215927305No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5060.11406595537000426No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT5020.11316424821292913No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4830.10888113921682224No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4710.10617601774559685No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4600.10369632306364024No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4550.10256918911729632No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4450.10031492122460849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)