FastQCFastQC Report
Wed 8 May 2024
EGAF00007960177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443603
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16390.36947450761153555No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13610.3068058601948138No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13540.30522787266993234No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12850.28967342421038633No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11600.2614950755517884No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10650.24007953057125403No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10200.2299353250541588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9520.2146063033838815No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9460.21325374264826885No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9180.2069417925487429No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.2053638050238614No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC8850.19950270850287305No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8810.19860100134579795No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7520.1695209455301249No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.163208995430599No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG7230.16298356864133018No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.16027844717010478No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC7080.15960216680229847No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT6820.1537410702813101No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6540.14742912018178417No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6320.14246973081787093No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5690.1282678430939376No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5690.1282678430939376No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5520.12443558767636828No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5430.12240674657294924No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5420.12218131978368044No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5060.11406595537000426No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGA4980.112262541055854No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4850.10933199279535982No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4830.10888113921682224No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4780.10775400527047833No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4640.10459803022071539No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4490.10121662838168362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)