FastQCFastQC Report
Wed 8 May 2024
EGAF00007960178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418544
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12470.29793761229404797No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12040.28766390152528765No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10440.24943614052524943No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9960.23796781222523797No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9190.21957070224396957No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9180.2193317787377193No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC8690.20762452693145764No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8160.19496158110019496No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7580.1811040177376811No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7250.17321954203142323No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7080.16915784242516915No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA6840.1634236782751634No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6600.1576895141251577No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6380.15243319698765243No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6050.14454872128139457No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5980.14287625673764287No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5950.14215948621889216No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5570.13308039298138308No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5530.13212469895638213No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5440.12997438740012998No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5050.12065637065637065No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4900.11707251806261708No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4870.11635574754386636No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT4750.11348866546886348No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4670.11157727741886157No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4640.11086050690011086No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4480.10703773080010703No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4470.1067988072938568No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4460.10655988378760657No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4450.10632096028135632No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4250.10154249015635154No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4220.10082571963760081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)