FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007960179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418544
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38970.931084903857181No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14850.35480140678160477No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12950.3094059405940594No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12870.3074945525440575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12360.29530945372529527No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10770.2573206162315073No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9790.2339061126189839No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9170.2190928552314691No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.21503115562521505No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC8780.20977483848770975No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8550.2042795978439543No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8370.19997897473145No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8230.19663404564394665No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7480.17871478267517873No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7460.17823693566267823No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6900.16485721931266487No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6700.16007874918766007No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6620.15816736113765817No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT6370.1521942734814022No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6260.14956611491264957No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5720.13666424557513668No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5140.12280668221262281No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4960.1185060591001185No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4940.11802821208761803No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4900.11707251806261708No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4750.11348866546886348No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4750.11348866546886348No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4730.11301081845636302No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4620.1103826598876104No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGA4540.10847127183760848No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4330.10345387820635346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)