FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448084
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13230.2952571392863838No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12640.2820899652743682No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11350.25330072040063917No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10340.2307603038715955No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9690.2162540952142902No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9590.21402237080547395No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9150.2042027834066827No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8940.19951616214816864No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8560.19103560939466707No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7980.1780916078235331No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA7770.17340498656501904No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG7290.16269270940270128No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6870.15331946688567322No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6790.15153408735862026No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6650.14840967318627757No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6240.13925960311013114No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6210.13859008578748627No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6180.13792056846484144No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT6100.13613518893778845No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5870.13100222279751117No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5430.12118263539871987No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5400.12051311807607502No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5240.1169423590219691No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5130.11448746217227128No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5090.1135947724087448No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5080.11337159996786317No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA5000.11158622044081021No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4720.10533739209612483No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4610.10288249524642701No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT4610.10288249524642701No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT4550.10154346060113728No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4510.1006507708376108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)