FastQCFastQC Report
Wed 8 May 2024
EGAF00007960181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448084
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15890.35462100856089485No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13850.30909383062104423No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13780.30753162353487296No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13660.3048535542442935No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11860.2646825148856018No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10410.23232251095776685No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9850.2198248542683961No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9720.21692361253693504No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9680.21603092277340855No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC9460.2111211290740129No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9310.2077735424607886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9170.2046491282884459No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9000.20085519679345834No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7730.17251229680149258No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7470.16670981333857046No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC7380.16470126137063587No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG7350.164031744047991No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT7310.1631390542844645No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7240.16157684719829318No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6910.1542121566491997No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6320.1410449826371841No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6040.13479615429249872No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5760.12854732594781335No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5720.12765463618428688No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5590.1247533944528258No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5410.12073629051695665No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5110.11404111729050803No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5080.11337159996786317No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4820.10756911650494105No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGA4680.10444470233259835No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4670.10422152989171672No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4660.1039983574508351No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4650.1037751850099535No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4630.10332884012819026No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4510.1006507708376108No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4500.10042759839672917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)