FastQCFastQC Report
Wed 8 May 2024
EGAF00007960182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422491
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12370.29278730197803027No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11890.2814261132189798No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10480.248052621239269No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10470.2478159298067888No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9360.22154318080148455No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9040.21396905496211754No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8820.20876184344755275No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8470.20047764331074508No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7490.17728188292768365No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7430.17586173433280236No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA6930.16402716270879145No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6780.16047679122158817No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6550.15503288827454315No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6530.1545595054095827No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC6400.15148251678733987No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT6110.1446184652454135No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6090.1441450823804531No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5770.13657095654108609No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5770.13657095654108609No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5380.12733999067435756No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5180.12260616202475318No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5180.12260616202475318No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5090.12047593913243122No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4920.1164521847802675No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT4920.1164521847802675No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4760.112665121860584No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4720.11171835613066315No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4640.1098248246708214No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4580.10840467607594008No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC4500.10651114461609833No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4430.1048543045887368No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4350.10296077312889505No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4300.10177731596649395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)