FastQCFastQC Report
Wed 8 May 2024
EGAF00007960183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422491
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35660.8440416482244593No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15570.36852856037170023No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13190.3121959994414082No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12750.3017815764122786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12530.29657436489771377No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10930.25870373570087885No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10060.2381115810750998No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC9100.21538920355699884No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9000.21302228923219665No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8980.21254890636723625No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8970.21231221493475602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8820.20876184344755275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8120.19219344317393744No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7280.1723113628455991No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7090.16781422562847492No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6810.1611868655190288No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6590.155979654004464No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT6530.1545595054095827No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6500.15384943111214203No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT6500.15384943111214203No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6330.14982567675997832No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.12876013926923888No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5340.12639322494443667No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5230.12378961918715428No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5100.12071263056491145No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5090.12047593913243122No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT4970.1176356419426686No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGA4720.11171835613066315No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4660.11029820753578183No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4660.11029820753578183No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4460.10556437888617745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)