FastQCFastQC Report
Wed 8 May 2024
EGAF00007960185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464773
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27020.5813590720631362No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.2627088922979605No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11590.2493690468250092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9060.19493387094344983No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8330.1792272786930394No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8240.17729084951148194No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6570.14135933025369374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5860.12608305559918498No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5060.10887035176311878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)