FastQCFastQC Report
Wed 8 May 2024
EGAF00007960187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438531
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40680.9276425155804265No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25160.5737336699115911No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.26360736185127165No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9720.22164909664311078No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8040.18333937623565952No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7050.16076400528126858No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.12541872752439392No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5420.1235944551240391No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4410.1005630160695595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)