FastQCFastQC Report
Wed 8 May 2024
EGAF00007960189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471889
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27370.5800092818438235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12230.2591711186317121No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11330.2400988368027227No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9210.19517301738332532No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7990.1693194797929174No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7760.16444545221439788No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7110.15067102644901662No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.14177062826215486No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4990.10574520702961925No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4870.10320223611908733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)