FastQCFastQC Report
Wed 8 May 2024
EGAF00007960191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444648
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36790.8273960526079056No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26840.6036235404184883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11610.26110541372051604No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10560.23749122901711017No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7910.17789352476565734No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7280.16372501394361383No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.1396610352458574No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5650.12706680340404095No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4510.10142854572605746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)