FastQCFastQC Report
Wed 8 May 2024
EGAF00007960193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484219
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63531.312009648526803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12470.257528101953868No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9570.1976378456855266No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8580.1771925513042652No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6800.1404323250430074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5230.10800897940807774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.1078024612830145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)