FastQCFastQC Report
Wed 8 May 2024
EGAF00007960197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488111
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61591.2618031554298101No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13220.27084003433645215No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10070.2063055329627892No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9700.19872528994429547No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7660.15693151762611374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.11411338814327068No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5070.10386981649665751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)