FastQCFastQC Report
Wed 8 May 2024
EGAF00007960199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462714
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59041.2759501549553287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38890.8404759743599718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12720.2748998301326521No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9150.19774634007183706No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6740.1456623313753204No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.1151899445445783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4960.1071936444542417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)