FastQCFastQC Report
Wed 8 May 2024
EGAF00007960200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478313
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6970.1457204801040323No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6860.14342073077670897No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6220.13004037105410055No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4800.10035269791956312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)