FastQCFastQC Report
Wed 8 May 2024
EGAF00007960201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478313
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9330.19506055658115085No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.19129733040916722No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6950.1453023438627008No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6640.13882123212206232No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5410.11310585328017428No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5170.10808821838419612No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4800.10035269791956312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)