FastQCFastQC Report
Wed 8 May 2024
EGAF00007960203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450292
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43180.9589333143826673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8920.198093681433381No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6110.135689730219502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.135689730219502No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4620.10260009060787223No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4590.10193385625327565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)