FastQCFastQC Report
Wed 8 May 2024
EGAF00007960204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483674
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7170.14824034370257655No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7060.1459660845941688No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6150.12715175924279576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)