FastQCFastQC Report
Wed 8 May 2024
EGAF00007960207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457709
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39820.8699850778551437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8350.18243032144878077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6560.1433225040364074No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5830.1273735058738194No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.11470169911450287No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5010.10945819286926847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)