FastQCFastQC Report
Wed 8 May 2024
EGAF00007960209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477180
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17560.3679953057546419No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13310.2789303826648225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10390.21773754138899368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9670.2026488955949537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9550.20013412129594702No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.13831258644536654No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6160.12909174734900875No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5910.1238526342260782No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5840.12238568255165765No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5760.12070916635231989No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5130.1075066012825349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)