FastQCFastQC Report
Wed 8 May 2024
EGAF00007960211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449349
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43100.9591653703468795No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15710.34961689021228487No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12400.2759547701230002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9680.21542275603150335No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8330.18537929315520899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5840.12996579496115493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.12751780909716057No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5350.11906113065790734No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5230.11639060062445894No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5220.11616805645500491No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4990.11104954055756217No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4600.1023703179488549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)