FastQCFastQC Report
Wed 8 May 2024
EGAF00007960213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482865
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16640.34460977705984075No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13280.27502511053814216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10280.21289594400091122No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9930.2056475412382343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.18245265239766809No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.13834094415623416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6530.13523448582937259No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5810.12032348586043719No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5750.11908090252969257No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5650.11700993031178487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5020.10396280533896637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4910.10168473589926791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)