FastQCFastQC Report
Wed 8 May 2024
EGAF00007960215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454312
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39800.8760499392487981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15060.33149025339414323No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12380.27249995597739No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10100.22231418056313726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8440.18577541425276023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5770.1270052298860695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5730.12612477768581945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5390.11864093398369403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5220.11489901213263133No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4970.10939618588106852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4860.10697494233038089No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4580.10081177692863054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)