FastQCFastQC Report
Wed 8 May 2024
EGAF00007960217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489218
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29510.6032075679962716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11190.22873238515344896No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.19950206247521554No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.14022378571516175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4960.10138629404478168No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4950.10118188619388493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)