FastQCFastQC Report
Wed 8 May 2024
EGAF00007960221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495929
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26840.541206503350278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.23249295766127812No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10380.20930415442533104No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7530.1518362507536361No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5530.11150789729981511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)