FastQCFastQC Report
Wed 8 May 2024
EGAF00007960223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469053
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40960.8732488652668249No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27710.5907647963023369No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10800.2302511656465261No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6490.13836389491166246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5200.11086167234832738No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4840.10318663349344318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)