FastQCFastQC Report
Wed 8 May 2024
EGAF00007960225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493375
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20190.40922219407144667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17250.34963263237902203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10260.2079554091715227No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10140.2055231821636686No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9750.19761844438814288No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9630.19518621738028882No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8440.171066632885736No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8110.16437800861413732No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7610.15424372941474537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7120.14431213579934127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7050.1428933367114264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.14106916645553585No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6370.12911071700025337No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.11593615404104382No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5280.10701798834557893No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5050.10235621991385863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)