FastQCFastQC Report
Wed 8 May 2024
EGAF00007960227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463842
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43470.9371725716946718No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18940.4083286981342785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16560.3570181225503512No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9050.19510954161115207No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8950.19295363507401225No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8670.18691709677002083No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8030.17311929493232608No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.1556564519814937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7190.15500968002035176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6680.14401455668093877No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6250.13474415857123762No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6100.13151029876552792No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5370.11577218104440737No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.1131850931998396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)