FastQCFastQC Report
Wed 8 May 2024
EGAF00007960229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498660
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19770.3964625195524004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16900.3389082741747884No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10610.21277022420085828No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10210.20474872658725385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10090.2023422773031725No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.19111218064412624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9000.18048369630610037No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8260.1656439257209321No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7290.14619179400794127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7080.14198050776079893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7010.14057674567841816No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.13375847270685437No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6000.1203224642040669No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.11410580355352344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)