FastQCFastQC Report
Wed 8 May 2024
EGAF00007960231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469972
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39900.8489867481466981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18750.39895993803886187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15910.3385308060905756No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9360.19916080106899986No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9080.19320299932761953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8190.17426570093537488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8100.17235069323278834No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7590.16149898291813128No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.15086005123709498No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6480.13788055458623066No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6470.13766777595260993No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.12787995880605652No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5860.12468827930174563No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5160.10979377494829479No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5070.10787876724570825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)