FastQCFastQC Report
Wed 8 May 2024
EGAF00007960233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440375
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49201.1172296338347998No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT19340.4391711609423786No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16090.3653704229349986No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14860.3374396820891286No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11400.2588702810105024No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10800.2452455293783707No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10470.23775191598069825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.19824013624751632No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8120.18438830542151574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7910.17961964235026967No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7690.17462390008515472No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7500.17030939540164633No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6840.15532216860630144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6310.1432869713312518No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.1426057337496452No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.12602895259721827No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5470.12421231904626738No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5460.12398523985239851No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4910.11149588418961114No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG4890.11104172580187341No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4540.10309395401646325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)