FastQCFastQC Report
Wed 8 May 2024
EGAF00007960234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416631
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21290.5110037419203084No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19180.4603594067652191No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16530.3967539621391591No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14480.34754975025862217No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10740.257782066144862No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9690.23257990884019672No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8640.20737775153553145No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7560.18145553259359No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7200.1728147929462762No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7160.17185471076324133No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG7040.16897446421413673No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6690.16057374511258163No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.15097292328223297No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5330.12793095088939613No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5270.12649082761484381No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5070.12169041669966948No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5030.12073033451663463No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4860.11664998523873643No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT4430.1063291017711116No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4400.10560904013383544No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4370.1048889784965593No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4340.10416891685928314No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4260.10224875249321341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)