FastQCFastQC Report
Wed 8 May 2024
EGAF00007960235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416631
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47421.1381774279878358No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38710.9291195326319933No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17580.42195611944382444No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15350.3684315377396305No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14060.33746888733675606No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11320.2717032577988676No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10270.2465011004942023No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10210.24506097721965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7430.1783352654987267No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7370.17689514222417438No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC7310.1754550189496221No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6670.1600937040210642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6560.1574534780177183No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.14137210145188428No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5330.12793095088939613No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5270.12649082761484381No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5240.12577076597756767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5230.12553074543180898No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4600.1104094510490098No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4350.10440893740504187No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG4230.10152869085593727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)