FastQCFastQC Report
Wed 8 May 2024
EGAF00007960236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444931
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22490.5054716349276629No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19590.4402929892500186No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT17870.401635309744657No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16010.3598310749307196No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10990.24700459172321104No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10110.2272262440693051No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8650.19441216727987035No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG7940.1784546367863781No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7920.178005128885153No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7870.17688135913209016No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7820.1757575893790273No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6940.15597924172512143No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.15170891666348266No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.1317058150589642No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5570.12518795049119977No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5450.12249090308384894No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5290.11889483987404788No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5270.11844533197282274No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT4940.11102845160260803No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4620.1038363251830059No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4580.10293730938055563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)