FastQCFastQC Report
Wed 8 May 2024
EGAF00007960237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444931
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47391.0651089719529545No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT19460.43737118789205515No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16480.37039451060951023No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15810.35533599591846826No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12160.2733008039448813No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10840.24363328246402252No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10810.2429590206121848No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC8500.19104085802068185No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8460.1901418422182316No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8260.18564676320598025No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7900.17755562098392785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7490.1683407090088126No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7450.16744169320636232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.1438425283920428No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6210.13957220333040404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6040.1357513861699904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5510.12383942678752435No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5470.12294041098507408No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4820.10833140419525725No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG4730.10630861863974413No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4620.1038363251830059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)