FastQCFastQC Report
Wed 8 May 2024
EGAF00007960238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420169
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21170.5038448814643631No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19290.4591009807958226No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16460.3917471303213707No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14870.35390521433042416No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10220.24323546001727875No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9410.22395750281434373No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7910.1882575820681678No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7820.18611558682339727No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7480.17802360478759738No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7080.16850362592195045No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6930.16493363384733284No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6790.16160164124435644No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6220.14803567136080958No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.12875771415787457No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5380.12804371574295106No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5180.12328372631012759No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5110.12161773000863937No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5050.12018973317879235No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4720.11233575061463363No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT4720.11233575061463363No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT4450.10590976488032197No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4290.1021017733340632No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4260.10138777491913967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)