FastQCFastQC Report
Wed 8 May 2024
EGAF00007960240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540562
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10760.19905209763172402No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9050.1674183534913664No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6530.120800204231892No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6160.1139554759676041No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5780.10692575504752462No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5550.10267092396431862No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)