FastQCFastQC Report
Wed 8 May 2024
EGAF00007960241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540562
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11340.20978167166763478No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11030.20404689933809628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.18517764844735662No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9010.16667838286820014No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.1296798517098871No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6680.12357509406876546No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6440.11913527032976791No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5770.10674076239173304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)