FastQCFastQC Report
Wed 8 May 2024
EGAF00007960243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513435
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42310.824057573013137No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10550.20547878504581885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9980.19437708765471773No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9200.1791852912247899No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6750.13146746910514476No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6030.11744427240059599No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5530.10770594135577045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5270.10264200921246117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)