FastQCFastQC Report
Wed 8 May 2024
EGAF00007960244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537680
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11490.21369587858949562No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8800.16366612111292964No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6700.12460943312007142No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6630.12330754352030948No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6220.11568219015027525No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5450.1013614045528939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)