FastQCFastQC Report
Wed 8 May 2024
EGAF00007960245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537680
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11670.2170435947031692No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.2055125725338491No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.18895997619401875No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.17315131676833806No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7230.1344665972325547No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6610.12293557506323463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6340.1179140008927243No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5870.10917274215146557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)