FastQCFastQC Report
Wed 8 May 2024
EGAF00007960246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522397
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9920.18989389295880338No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8390.1606058227746331No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6360.12174648782439408No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.12040651075714447No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5900.11294092423961087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5630.10777244126593377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)