FastQCFastQC Report
Wed 8 May 2024
EGAF00007960247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522397
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42170.8072404703702357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10240.19601950240908736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9980.19104244473073162No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9690.18549111116641176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7070.13533768379221167No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6330.12117221193842997No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.11619515426007423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.10949526892382612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)