FastQCFastQC Report
Wed 8 May 2024
EGAF00007960248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538510
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7930.14725817533564836No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6920.12850272046944347No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6650.12348888600025996No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5770.10714749958218045No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5760.10696180200924774No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5520.10250506025886241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)