FastQCFastQC Report
Wed 8 May 2024
EGAF00007960249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538510
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10200.1894115243913762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.1645280496183915No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7370.13685911125141595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.13537353066795418No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.12813132532357802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.11680377337468198No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.11661807580174927No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5940.11030435832203674No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5580.10361924569645875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)