FastQCFastQC Report
Wed 8 May 2024
EGAF00007960250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514044
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7750.150765304137389No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6500.12644831959910047No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6130.11925049217576704No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5950.1157488464022535No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5580.10855101897892008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)