FastQCFastQC Report
Wed 8 May 2024
EGAF00007960251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514044
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43020.8368933398697388No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.19142330228540747No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6880.13384068289874018No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6620.12878275011477616No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5890.11458163114441565No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.1132198800102715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.11127452124720841No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5700.11088544949459579No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5290.10290947856603716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)