FastQCFastQC Report
Wed 8 May 2024
EGAF00007960253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536626
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.1919400103610336No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.18224983508067072No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7200.13417165772810113No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6780.1263449776939619No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6760.12597227864471716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6620.12336338530000411No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6520.12149989005378048No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6290.11721385098746612No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5680.10584652998550201No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5380.10025604424683113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)