FastQCFastQC Report
Wed 8 May 2024
EGAF00007960254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521731
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7490.14356057048555673No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6510.12477694444071752No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6430.1232435872125674No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5790.11097672938736629No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5510.10560997908884079No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5430.10407662186069067No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5410.10369328255365312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)